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Report for Sequence Feature Glyma11g10480

Feature Type:gene_model
Chromosome:Gm11
Start:7493998
stop:7495729
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g10480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16600AT Annotation by Michelle Graham. TAIR10: rotamase CYP 3 | chr2:7200862-7201383 FORWARD LENGTH=173 SoyBaseE_val: 1.00E-112ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF161Panther ROC3 (ROTAMASE CYP 3), PEPTIDYL-PROLYL CIS-TRANS I JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_Q8W171UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase 1 n=1 Tax=Glycine max RepID=CYP1_SOYBN SoyBaseE_val: 5.00E-121ISS
UniRef100_UPI000189D791UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D791 related cluster n=1 Tax=unknown RepID=UPI000189D791 SoyBaseE_val: 5.00E-123ISS

Expression Patterns of Glyma11g10480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g10480
ParalogEvidenceComments
Glyma12g02790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g10480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g098700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g10480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g10480
>Glyma11g10480.2   sequence type=CDS   gene model=Glyma11g10480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAACCCTAATCCCTATTTTTCTTCCTCAGTAGTGTCATTTACGCTTCTCTTCTCTGCAGCAACTATGCCTAACCCTAAGGTCTTCTTCGACATGACCATCGGCGGTCAATCTGCTGGCCGCATCGTGATGGAGCTCTACGCCGACGTCACTCCCCGCACCGCCGAGAACTTCCGCGCGCTTTGCACCGGCGAGAAGGGCGTAGGGCGGAGCGGCAAGCCCCTCCACTACAAGGGCTCGTCCTTCCACCGCGTGATCCCGAGTTTCATGTGTCAGGGTGGCGACTTCACCGCCGGAAACGGAACCGGCGGCGAGTCGATTTATGGCGCCAAGTTCGCCGACGAGAACTTCGTGAAGAAGCACACCGGTCCCGGCATCCTCTCCATGGCGAACGCCGGTCCCGGAACCAACGGATCTCAGTTCTTCATTTGCACGGAGAAGACAGAGTGGCTCGACGGAAAGCATGTCGTGTTCGGACAGGTCATCGAAGGATTGAACGTTGTCAAGGACATCGAGAAGGTCGGATCCAGCTCCGGCAGGACCTCCAAGCCCGTTGTCATCGCCAACTGCGGTCAACTCTCTTAG
Predicted protein sequences of Glyma11g10480
>Glyma11g10480.2   sequence type=predicted peptide   gene model=Glyma11g10480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNPNPYFSSSVVSFTLLFSAATMPNPKVFFDMTIGGQSAGRIVMELYADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPSFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTEKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSSSGRTSKPVVIANCGQLS*






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